My Bibliography

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Zhang W, Li Y, Fung AA, Li Z, Jang H, Zha H, Chen X, Gao F, Wu JY, Sheng H, Yao J, Skowronska-Krawczyk D, Jain S, Shi L. Multi-molecular hyperspectral PRM-SRS microscopy. Nat Commun. 2024 Feb 21;15(1):1599. doi: 10.1038/s41467-024-45576-6. PubMed PMID: 38383552; PubMed Central PMCID: PMC10881988.

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Lake BB, Menon R, Winfree S, Hu Q, Melo Ferreira R, Kalhor K, Barwinska D, Otto EA, Ferkowicz M, Diep D, Plongthongkum N, Knoten A, Urata S, Mariani LH, Naik AS, Eddy S, Zhang B, Wu Y, Salamon D, Williams JC, Wang X, Balderrama KS, Hoover PJ, Murray E, Marshall JL, Noel T, Vijayan A, Hartman A, Chen F, Waikar SS, Rosas SE, Wilson FP, Palevsky PM, Kiryluk K, Sedor JR, Toto RD, Parikh CR, Kim EH, Satija R, Greka A, Macosko EZ, Kharchenko PV, Gaut JP, Hodgin JB, Eadon MT, Dagher PC, El-Achkar TM, Zhang K, Kretzler M, Jain S. An atlas of healthy and injured cell states and niches in the human kidney. Nature. 2023 Jul;619(7970):585-594. doi: 10.1038/s41586-023-05769-3. Epub 2023 Jul 19. PubMed PMID: 37468583; PubMed Central PMCID: PMC10356613.

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Sikkema L, Ramírez-Suástegui C, Strobl DC, Gillett TE, Zappia L, Madissoon E, Markov NS, Zaragosi LE, Ji Y, Ansari M, Arguel MJ, Apperloo L, Banchero M, Bécavin C, Berg M, Chichelnitskiy E, Chung MI, Collin A, Gay ACA, Gote-Schniering J, Hooshiar Kashani B, Inecik K, Jain M, Kapellos TS, Kole TM, Leroy S, Mayr CH, Oliver AJ, von Papen M, Peter L, Taylor CJ, Walzthoeni T, Xu C, Bui LT, De Donno C, Dony L, Faiz A, Guo M, Gutierrez AJ, Heumos L, Huang N, Ibarra IL, Jackson ND, Kadur Lakshminarasimha Murthy P, Lotfollahi M, Tabib T, Talavera-López C, Travaglini KJ, Wilbrey-Clark A, Worlock KB, Yoshida M, van den Berge M, Bossé Y, Desai TJ, Eickelberg O, Kaminski N, Krasnow MA, Lafyatis R, Nikolic MZ, Powell JE, Rajagopal J, Rojas M, Rozenblatt-Rosen O, Seibold MA, Sheppard D, Shepherd DP, Sin DD, Timens W, Tsankov AM, Whitsett J, Xu Y, Banovich NE, Barbry P, Duong TE, Falk CS, Meyer KB, Kropski JA, Pe'er D, Schiller HB, Tata PR, Schultze JL, Teichmann SA, Misharin AV, Nawijn MC, Luecken MD, Theis FJ. An integrated cell atlas of the lung in health and disease. Nat Med. 2023 Jun;29(6):1563-1577. doi: 10.1038/s41591-023-02327-2. Epub 2023 Jun 8. PubMed PMID: 37291214; PubMed Central PMCID: PMC10287567.

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Gutierrez MJ, Nino G, Sun D, Restrepo-Gualteros S, Sadreameli SC, Fiorino EK, Wu E, Vece T, Hagood JS, Maglione PJ, Kurland G, Koumbourlis A, Sullivan KE. The lung in inborn errors of immunity: From clinical disease patterns to molecular pathogenesis. J Allergy Clin Immunol. 2022 Dec;150(6):1314-1324. doi: 10.1016/j.jaci.2022.08.024. Epub 2022 Oct 14. Review. PubMed PMID: 36244852; PubMed Central PMCID: PMC9826631.

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Vece TJ, Gower WA, Davis SD, Austin A, McKinzie CJ, Hatch JE, Davis M, Hagood JS. Building a pediatric rare lung disease program: It takes a community of villages. Pediatr Pulmonol. 2022 Nov;57(11):2583-2588. doi: 10.1002/ppul.26083. Epub 2022 Aug 17. PubMed PMID: 35932221.

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Dinnon KH 3rd, Leist SR, Okuda K, Dang H, Fritch EJ, Gully KL, De la Cruz G, Evangelista MD, Asakura T, Gilmore RC, Hawkins P, Nakano S, West A, Schäfer A, Gralinski LE, Everman JL, Sajuthi SP, Zweigart MR, Dong S, McBride J, Cooley MR, Hines JB, Love MK, Groshong SD, VanSchoiack A, Phelan SJ, Liang Y, Hether T, Leon M, Zumwalt RE, Barton LM, Duval EJ, Mukhopadhyay S, Stroberg E, Borczuk A, Thorne LB, Sakthivel MK, Lee YZ, Hagood JS, Mock JR, Seibold MA, O'Neal WK, Montgomery SA, Boucher RC, Baric RS. SARS-CoV-2 infection produces chronic pulmonary epithelial and immune cell dysfunction with fibrosis in mice. Sci Transl Med. 2022 Sep 28;14(664):eabo5070. doi: 10.1126/scitranslmed.abo5070. Epub 2022 Sep 28. PubMed PMID: 35857635; PubMed Central PMCID: PMC9273046.

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Hansen J, Sealfon R, Menon R, Eadon MT, Lake BB, Steck B, Anjani K, Parikh S, Sigdel TK, Zhang G, Velickovic D, Barwinska D, Alexandrov T, Dobi D, Rashmi P, Otto EA, Rivera M, Rose MP, Anderton CR, Shapiro JP, Pamreddy A, Winfree S, Xiong Y, He Y, de Boer IH, Hodgin JB, Barisoni L, Naik AS, Sharma K, Sarwal MM, Zhang K, Himmelfarb J, Rovin B, El-Achkar TM, Laszik Z, He JC, Dagher PC, Valerius MT, Jain S, Satlin LM, Troyanskaya OG, Kretzler M, Iyengar R, Azeloglu EU. A reference tissue atlas for the human kidney. Sci Adv. 2022 Jun 10;8(23):eabn4965. doi: 10.1126/sciadv.abn4965. Epub 2022 Jun 8. PubMed PMID: 35675394; PubMed Central PMCID: PMC9176741.

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Hu P, Leyton L, Hagood JS, Barker TH. Thy-1-Integrin Interactions in cis and Trans Mediate Distinctive Signaling. Front Cell Dev Biol. 2022;10:928510. doi: 10.3389/fcell.2022.928510. eCollection 2022. Review. PubMed PMID: 35733855; PubMed Central PMCID: PMC9208718.

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Menon R, Bomback AS, Lake BB, Stutzke C, Grewenow SM, Menez S, D'Agati VD, Jain S. Integrated single-cell sequencing and histopathological analyses reveal diverse injury and repair responses in a participant with acute kidney injury: a clinical-molecular-pathologic correlation. Kidney Int. 2022 Jun;101(6):1116-1125. doi: 10.1016/j.kint.2022.03.011. Epub 2022 Mar 23. PubMed PMID: 35339536; PubMed Central PMCID: PMC9769136.

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Duong TE, Wu Y, Sos BC, Dong W, Limaye S, Rivier LH, Myers G, Hagood JS, Zhang K. A single-cell regulatory map of postnatal lung alveologenesis in humans and mice. Cell Genom. 2022 Mar 9;2(3). doi: 10.1016/j.xgen.2022.100108. PubMed PMID: 35434692; PubMed Central PMCID: PMC9012447.

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Sun X, Perl AK, Li R, Bell SM, Sajti E, Kalinichenko VV, Kalin TV, Misra RS, Deshmukh H, Clair G, Kyle J, Crotty Alexander LE, Masso-Silva JA, Kitzmiller JA, Wikenheiser-Brokamp KA, Deutsch G, Guo M, Du Y, Morley MP, Valdez MJ, Yu HV, Jin K, Bardes EE, Zepp JA, Neithamer T, Basil MC, Zacharias WJ, Verheyden J, Young R, Bandyopadhyay G, Lin S, Ansong C, Adkins J, Salomonis N, Aronow BJ, Xu Y, Pryhuber G, Whitsett J, Morrisey EE. A census of the lung: CellCards from LungMAP. Dev Cell. 2022 Jan 10;57(1):112-145.e2. doi: 10.1016/j.devcel.2021.11.007. Epub 2021 Dec 21. PubMed PMID: 34936882; PubMed Central PMCID: PMC9202574.

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Bradford L, Ross MK, Minso J, Cernelc-Kohan M, Shayan K, Wong SS, Li X, Rivier L, Jegga AG, Deutsch GH, Vece TJ, Loughlin CE, Gower WA, Hurley C, Furman W, Stokes D, Hagood JS. Interstitial lung disease in children with Rubinstein-Taybi syndrome. Pediatr Pulmonol. 2022 Jan;57(1):264-272. doi: 10.1002/ppul.25709. Epub 2021 Oct 28. PubMed PMID: 34585851.

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Martin M, Zhang J, Miao Y, He M, Kang J, Huang HY, Chou CH, Huang TS, Hong HC, Su SH, Wong SS, Harper RL, Wang L, Bhattacharjee R, Huang HD, Chen ZB, Malhotra A, Rabinovitch M, Hagood JS, Shyy JY. Role of endothelial cells in pulmonary fibrosis via SREBP2 activation. JCI Insight. 2021 Nov 22;6(22). doi: 10.1172/jci.insight.125635. PubMed PMID: 34806652; PubMed Central PMCID: PMC8663776.

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Li X, Wong SS, Tan C, Espinoza CR, Hagood JS. Loss of Thy-1 may reduce lung regeneration after pneumonectomy in mice. Minerva Med. 2021 Oct;112(5):622-630. doi: 10.23736/S0026-4806.20.06691-4. Epub 2020 Jul 20. PubMed PMID: 32696636.

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Nishio T, Koyama Y, Liu X, Rosenthal SB, Yamamoto G, Fuji H, Baglieri J, Li N, Brenner LN, Iwaisako K, Taura K, Hagood JS, LaRusso NF, Bera TK, Pastan I, Brenner DA, Kisseleva T. Immunotherapy-based targeting of MSLN(+) activated portal fibroblasts is a strategy for treatment of cholestatic liver fibrosis. Proc Natl Acad Sci U S A. 2021 Jul 20;118(29). doi: 10.1073/pnas.2101270118. PubMed PMID: 34253615; PubMed Central PMCID: PMC8307749.

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Tamburro RF, Cooke KR, Davies SM, Goldfarb S, Hagood JS, Srinivasan A, Steiner ME, Stokes D, DiFronzo N, El-Kassar N, Shelburne N, Natarajan A. Pulmonary Complications of Pediatric Hematopoietic Cell Transplantation. A National Institutes of Health Workshop Summary. Ann Am Thorac Soc. 2021 Mar;18(3):381-394. doi: 10.1513/AnnalsATS.202001-006OT. PubMed PMID: 33058742; PubMed Central PMCID: PMC7919149.

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Maldonado H, Hagood JS. Cooperative signaling between integrins and growth factor receptors in fibrosis. J Mol Med (Berl). 2021 Feb;99(2):213-224. doi: 10.1007/s00109-020-02026-2. Epub 2021 Jan 3. Review. PubMed PMID: 33392631.

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El-Achkar TM, Eadon MT, Menon R, Lake BB, Sigdel TK, Alexandrov T, Parikh S, Zhang G, Dobi D, Dunn KW, Otto EA, Anderton CR, Carson JM, Luo J, Park C, Hamidi H, Zhou J, Hoover P, Schroeder A, Joanes M, Azeloglu EU, Sealfon R, Winfree S, Steck B, He Y, D'Agati V, Iyengar R, Troyanskaya OG, Barisoni L, Gaut J, Zhang K, Laszik Z, Rovin BH, Dagher PC, Sharma K, Sarwal MM, Hodgin JB, Alpers CE, Kretzler M, Jain S. A multimodal and integrated approach to interrogate human kidney biopsies with rigor and reproducibility: guidelines from the Kidney Precision Medicine Project. Physiol Genomics. 2021 Jan 1;53(1):1-11. doi: 10.1152/physiolgenomics.00104.2020. Epub 2020 Nov 16. PubMed PMID: 33197228; PubMed Central PMCID: PMC7847045.

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Gaston B, Laguna TA, Noah TL, Hagood J, Voynow J, Ferkol T, Hershenson M, Boyne K, Delecaris A, Ross K, Gozal D, Celedón JC, Abman SH, Moore P, Davis S, Cornfield DN, Murphy T. A proposal for the addressing the needs of the pediatric pulmonary work force. Pediatr Pulmonol. 2020 Aug;55(8):1859-1867. doi: 10.1002/ppul.24856. Epub 2020 Jun 12. PubMed PMID: 32531116; PubMed Central PMCID: PMC7433343.

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Vece TJ, Wambach JA, Hagood JS. Childhood rare lung disease in the 21st century: "-omics" technology advances accelerating discovery. Pediatr Pulmonol. 2020 Jul;55(7):1828-1837. doi: 10.1002/ppul.24809. Review. PubMed PMID: 32533908; PubMed Central PMCID: PMC8711209.

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Li R, Li X, Hagood J, Zhu MS, Sun X. Myofibroblast contraction is essential for generating and regenerating the gas-exchange surface. J Clin Invest. 2020 Jun 1;130(6):2859-2871. doi: 10.1172/JCI132189. PubMed PMID: 32338642; PubMed Central PMCID: PMC7260039.

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Chen S, Lake BB, Zhang K. High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell. Nat Biotechnol. 2019 Dec;37(12):1452-1457. doi: 10.1038/s41587-019-0290-0. Epub 2019 Oct 14. PubMed PMID: 31611697; PubMed Central PMCID: PMC6893138.

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Tan C, Jiang M, Wong SS, Espinoza CR, Kim C, Li X, Connors E, Hagood JS. Soluble Thy-1 reverses lung fibrosis via its integrin-binding motif. JCI Insight. 2019 Nov 1;4(21). doi: 10.1172/jci.insight.131152. PubMed PMID: 31672942; PubMed Central PMCID: PMC6948761.

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Ding J, Ahangari F, Espinoza CR, Chhabra D, Nicola T, Yan X, Lal CV, Hagood JS, Kaminski N, Bar-Joseph Z, Ambalavanan N. Integrating multiomics longitudinal data to reconstruct networks underlying lung development. Am J Physiol Lung Cell Mol Physiol. 2019 Nov 1;317(5):L556-L568. doi: 10.1152/ajplung.00554.2018. Epub 2019 Aug 21. PubMed PMID: 31432713; PubMed Central PMCID: PMC6879899.

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Pan H, Deutsch GH, Wert SE. Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung. J Biomed Semantics. 2019 Oct 24;10(1):18. doi: 10.1186/s13326-019-0209-1. PubMed PMID: 31651362; PubMed Central PMCID: PMC6814058.

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Negreros M, Hagood JS, Espinoza CR, Balderas-Martínez YI, Selman M, Pardo A. Transforming growth factor beta 1 induces methylation changes in lung fibroblasts. PLoS One. 2019;14(10):e0223512. doi: 10.1371/journal.pone.0223512. eCollection 2019. PubMed PMID: 31603936; PubMed Central PMCID: PMC6788707.

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Lake BB, Chen S, Hoshi M, Plongthongkum N, Salamon D, Knoten A, Vijayan A, Venkatesh R, Kim EH, Gao D, Gaut J, Zhang K, Jain S. A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys. Nat Commun. 2019 Jun 27;10(1):2832. doi: 10.1038/s41467-019-10861-2. PubMed PMID: 31249312; PubMed Central PMCID: PMC6597610.

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Shentu TP, Hagood JS. Outsourcing Invasion, a Novel Function for Extracellular Vesicles in the Lung. Am J Respir Cell Mol Biol. 2019 Mar;60(3):251-252. doi: 10.1165/rcmb.2018-0345ED. PubMed PMID: 30372117; PubMed Central PMCID: PMC7401426.

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Hagood JS. Thy-1 as an Integrator of Diverse Extracellular Signals. Front Cell Dev Biol. 2019;7:26. doi: 10.3389/fcell.2019.00026. eCollection 2019. Review. PubMed PMID: 30859102; PubMed Central PMCID: PMC6397883.

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Zhou Y, Horowitz JC, Naba A, Ambalavanan N, Atabai K, Balestrini J, Bitterman PB, Corley RA, Ding BS, Engler AJ, Hansen KC, Hagood JS, Kheradmand F, Lin QS, Neptune E, Niklason L, Ortiz LA, Parks WC, Tschumperlin DJ, White ES, Chapman HA, Thannickal VJ. Extracellular matrix in lung development, homeostasis and disease. Matrix Biol. 2018 Nov;73:77-104. doi: 10.1016/j.matbio.2018.03.005. Epub 2018 Mar 8. Review. PubMed PMID: 29524630; PubMed Central PMCID: PMC6129220.

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Lal CV, Ambalavanan N. Mechanisms of Ventilator-induced Lung Injury: Is the Elafin in the Room?. Am J Respir Cell Mol Biol. 2018 Nov;59(5):531-532. doi: 10.1165/rcmb.2018-0205ED. PubMed PMID: 30095977; PubMed Central PMCID: PMC6236692.

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Fiore VF, Wong SS, Tran C, Tan C, Xu W, Sulchek T, White ES, Hagood JS, Barker TH. αvβ3 Integrin drives fibroblast contraction and strain stiffening of soft provisional matrix during progressive fibrosis. JCI Insight. 2018 Oct 18;3(20). doi: 10.1172/jci.insight.97597. PubMed PMID: 30333317; PubMed Central PMCID: PMC6237458.

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Yu G, Ibarra GH, Kaminski N. Fibrosis: Lessons from OMICS analyses of the human lung. Matrix Biol. 2018 Aug;68-69:422-434. doi: 10.1016/j.matbio.2018.03.014. Epub 2018 Mar 19. Review. PubMed PMID: 29567123; PubMed Central PMCID: PMC6015529.

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Duong TE, Hagood JS. Epigenetic Regulation of Myofibroblast Phenotypes in Fibrosis. Curr Pathobiol Rep. 2018 Mar;6(1):79-96. doi: 10.1007/s40139-018-0155-0. Epub 2018 Mar 16. PubMed PMID: 30271681; PubMed Central PMCID: PMC6159951.

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Ding J, Hagood JS, Ambalavanan N, Kaminski N, Bar-Joseph Z. iDREM: Interactive visualization of dynamic regulatory networks. PLoS Comput Biol. 2018 Mar;14(3):e1006019. doi: 10.1371/journal.pcbi.1006019. eCollection 2018 Mar. PubMed PMID: 29538379; PubMed Central PMCID: PMC5868853.

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Shentu TP, Huang TS, Cernelc-Kohan M, Chan J, Wong SS, Espinoza CR, Tan C, Gramaglia I, van der Heyde H, Chien S, Hagood JS. Thy-1 dependent uptake of mesenchymal stem cell-derived extracellular vesicles blocks myofibroblastic differentiation. Sci Rep. 2017 Dec 22;7(1):18052. doi: 10.1038/s41598-017-18288-9. PubMed PMID: 29273797; PubMed Central PMCID: PMC5741716.

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Ryu C, Sun H, Gulati M, Herazo-Maya JD, Chen Y, Osafo-Addo A, Brandsdorfer C, Winkler J, Blaul C, Faunce J, Pan H, Woolard T, Tzouvelekis A, Antin-Ozerkis DE, Puchalski JT, Slade M, Gonzalez AL, Bogenhagen DF, Kirillov V, Feghali-Bostwick C, Gibson K, Lindell K, Herzog RI, Dela Cruz CS, Mehal W, Kaminski N, Herzog EL, Trujillo G. Extracellular Mitochondrial DNA Is Generated by Fibroblasts and Predicts Death in Idiopathic Pulmonary Fibrosis. Am J Respir Crit Care Med. 2017 Dec 15;196(12):1571-1581. doi: 10.1164/rccm.201612-2480OC. PubMed PMID: 28783377; PubMed Central PMCID: PMC5754440.

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Ardini-Poleske ME, Clark RF, Ansong C, Carson JP, Corley RA, Deutsch GH, Hagood JS, Kaminski N, Mariani TJ, Potter SS, Pryhuber GS, Warburton D, Whitsett JA, Palmer SM, Ambalavanan N. LungMAP: The Molecular Atlas of Lung Development Program. Am J Physiol Lung Cell Mol Physiol. 2017 Nov 1;313(5):L733-L740. doi: 10.1152/ajplung.00139.2017. Epub 2017 Aug 10. Review. PubMed PMID: 28798251; PubMed Central PMCID: PMC5792185.

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Joshi S, Singh AR, Wong SS, Zulcic M, Jiang M, Pardo A, Selman M, Hagood JS, Durden DL. Rac2 is required for alternative macrophage activation and bleomycin induced pulmonary fibrosis; a macrophage autonomous phenotype. PLoS One. 2017;12(8):e0182851. doi: 10.1371/journal.pone.0182851. eCollection 2017. PubMed PMID: 28817691; PubMed Central PMCID: PMC5560537.

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Linkov F, Sanei-Moghaddam A, Edwards RP, Lounder PJ, Ismail N, Goughnour SL, Kang C, Mansuria SM, Comerci JT. Implementation of Hysterectomy Pathway: Impact on Complications. Womens Health Issues. 2017 Jul-Aug;27(4):493-498. doi: 10.1016/j.whi.2017.02.004. Epub 2017 Mar 24. PubMed PMID: 28347618; PubMed Central PMCID: PMC9089362.

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Liu X, Wong SS, Taype CA, Kim J, Shentu TP, Espinoza CR, Finley JC, Bradley JE, Head BP, Patel HH, Mah EJ, Hagood JS. Thy-1 interaction with Fas in lipid rafts regulates fibroblast apoptosis and lung injury resolution. Lab Invest. 2017 Mar;97(3):256-267. doi: 10.1038/labinvest.2016.145. Epub 2017 Feb 6. PubMed PMID: 28165468; PubMed Central PMCID: PMC5663248.

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Tzouvelekis A, Yu G, Lino Cardenas CL, Herazo-Maya JD, Wang R, Woolard T, Zhang Y, Sakamoto K, Lee H, Yi JS, DeIuliis G, Xylourgidis N, Ahangari F, Lee PJ, Aidinis V, Herzog EL, Homer R, Bennett AM, Kaminski N. SH2 Domain-Containing Phosphatase-2 Is a Novel Antifibrotic Regulator in Pulmonary Fibrosis. Am J Respir Crit Care Med. 2017 Feb 15;195(4):500-514. doi: 10.1164/rccm.201602-0329OC. PubMed PMID: 27736153; PubMed Central PMCID: PMC5378419.

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Kleyman M, Sefer E, Nicola T, Espinoza C, Chhabra D, Hagood JS, Kaminski N, Ambalavanan N, Bar-Joseph Z. Selecting the most appropriate time points to profile in high-throughput studies. Elife. 2017 Jan 26;6. doi: 10.7554/eLife.18541. PubMed PMID: 28124972; PubMed Central PMCID: PMC5319842.

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Clair G, Piehowski PD, Nicola T, Kitzmiller JA, Huang EL, Zink EM, Sontag RL, Orton DJ, Moore RJ, Carson JP, Smith RD, Whitsett JA, Corley RA, Ambalavanan N, Ansong C. Spatially-Resolved Proteomics: Rapid Quantitative Analysis of Laser Capture Microdissected Alveolar Tissue Samples. Sci Rep. 2016 Dec 22;6:39223. doi: 10.1038/srep39223. PubMed PMID: 28004771; PubMed Central PMCID: PMC5177886.

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Dietz AC, Chen Y, Yasui Y, Ness KK, Hagood JS, Chow EJ, Stovall M, Neglia JP, Oeffinger KC, Mertens AC, Robison LL, Armstrong GT, Mulrooney DA. Risk and impact of pulmonary complications in survivors of childhood cancer: A report from the Childhood Cancer Survivor Study. Cancer. 2016 Dec 1;122(23):3687-3696. doi: 10.1002/cncr.30200. Epub 2016 Aug 9. PubMed PMID: 27504874; PubMed Central PMCID: PMC5115933.

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Ambalavanan N, Morty RE. Searching for better animal models of BPD: a perspective. Am J Physiol Lung Cell Mol Physiol. 2016 Nov 1;311(5):L924-L927. doi: 10.1152/ajplung.00355.2016. Epub 2016 Sep 23. PubMed PMID: 27663992; PubMed Central PMCID: PMC5130540.

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Lal CV, Travers C, Aghai ZH, Eipers P, Jilling T, Halloran B, Carlo WA, Keeley J, Rezonzew G, Kumar R, Morrow C, Bhandari V, Ambalavanan N. The Airway Microbiome at Birth. Sci Rep. 2016 Aug 4;6:31023. doi: 10.1038/srep31023. PubMed PMID: 27488092; PubMed Central PMCID: PMC4973241.

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Sefer E, Kleyman M, Bar-Joseph Z. Tradeoffs between Dense and Replicate Sampling Strategies for High-Throughput Time Series Experiments. Cell Syst. 2016 Jul;3(1):35-42. doi: 10.1016/j.cels.2016.06.007. Epub 2016 Jul 21. PubMed PMID: 27453445; PubMed Central PMCID: PMC4966908.

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Glasser SW, Hagood JS, Wong S, Taype CA, Madala SK, Hardie WD. Mechanisms of Lung Fibrosis Resolution. Am J Pathol. 2016 May;186(5):1066-77. doi: 10.1016/j.ajpath.2016.01.018. Epub 2016 Mar 25. Review. PubMed PMID: 27021937; PubMed Central PMCID: PMC4861766.

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Checa M, Hagood JS, Velazquez-Cruz R, Ruiz V, García-De-Alba C, Rangel-Escareño C, Urrea F, Becerril C, Montaño M, García-Trejo S, Cisneros Lira J, Aquino-Gálvez A, Pardo A, Selman M. Cigarette Smoke Enhances the Expression of Profibrotic Molecules in Alveolar Epithelial Cells. PLoS One. 2016;11(3):e0150383. doi: 10.1371/journal.pone.0150383. eCollection 2016. PubMed PMID: 26934369; PubMed Central PMCID: PMC4775036.